PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G082200.1
Common NameB456_003G082200, LOC105788240
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 328aa    MW: 36912 Da    PI: 5.715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G082200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-18112162155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp     r  r +lg++ taeeAa  +++a+ +l+g
  Gorai.003G082200.1 112 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYNTAEEAAMVYDKAAIQLRG 162
                         59********.**********72....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.99E-32112169No hitNo description
Gene3DG3DSA:3.30.730.101.2E-29113170IPR001471AP2/ERF domain
PROSITE profilePS5103223.354113170IPR001471AP2/ERF domain
SMARTSM003806.9E-37113176IPR001471AP2/ERF domain
PfamPF008476.2E-12113162IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-21113170IPR016177DNA-binding domain
PRINTSPR003677.1E-10114125IPR001471AP2/ERF domain
PRINTSPR003677.1E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDPCSVSLIK YSEHRNETKL LSPLVNGRVE NKPEMKPRIV RISVTDADAT DSSSDDEEET  60
RMIRRRSRNR VKKFVNEITI ESTNLTESRC VRKKPAAEKL KVKAAAKVPT GKKFRGVRQR  120
PWGKWAAEIR DPLRRVRLWL GTYNTAEEAA MVYDKAAIQL RGQDALTNFT TPPMKDENIS  180
QKQLSSSDYN SGEESHNSYL CSPTSVLRCP SLSIDEVDSQ SFEKSRETRN RPRDVPDDSC  240
CISGENLSDF SEHSSLFPGD IFSSVPSLFD DHTSLHEGFL KDDFGYGYLS SGGDFEFGFG  300
TFSSWQHVDD HFQDIGDLFG SDPPLAF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21111169362ATERF1
3gcc_A5e-21111169362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470485.10.0PREDICTED: ethylene-responsive transcription factor CRF1-like
SwissprotQ9SUQ24e-65CRF2_ARATH; Ethylene-responsive transcription factor CRF2
TrEMBLA0A0D2RJ070.0A0A0D2RJ07_G
STRINGPOPTR_0001s10300.11e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.25e-59cytokinin response factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]